| Pl. | Mannschaft | Games | Goal difference | Pts |
|---|---|---|---|---|
| 1 | Hiroshima | 202 | 114 | 352 |
| 2 | Kashima | 203 | 89 | 333 |
| 3 | Urawa Reds | 203 | 68 | 331 |
| 4 | Nagoya | 199 | 41 | 329 |
| 5 | Yokohama | 203 | 62 | 328 |
| 6 | Kawasaki | 201 | 53 | 313 |
| 7 | Gamba Osaka | 169 | 94 | 293 |
| 8 | Kashiwa Reysol | 169 | 35 | 274 |
| 9 | Shimizu | 202 | -50 | 259 |
| 10 | A. Niigata | 203 | -29 | 258 |
| 11 | Vegalta Sendai | 198 | -1 | 257 |
| 12 | FC Tokyo | 169 | 40 | 249 |
| 13 | Cerezo Osaka | 168 | 35 | 230 |
| 14 | Omiya Ardija | 169 | -44 | 205 |
| 15 | Vissel Kobe | 168 | -27 | 203 |
| 16 | Sagan Tosu | 135 | -4 | 199 |
| 17 | Jubilo Iwata | 135 | -11 | 160 |
| 18 | Ventforet Kofu | 136 | -53 | 148 |
| 19 | Shonan | 100 | -77 | 89 |
| 20 | Montedio Yamag | 100 | -81 | 86 |
| 21 | Matsumoto Yama | 33 | -24 | 27 |
| 22 | Avispa Fukuo | 34 | -41 | 22 |
| 23 | Kyoto Sanga FC | 33 | -32 | 16 |
| 24 | Oita Trinita | 34 | -36 | 14 |
| 25 | Tokushima Vort | 34 | -58 | 14 |
| 26 | C. Sapporo | 34 | -63 | 14 |