| 1 | SpVgg Bayern HofHofBayernliga Nord | 9 | 312 | 122 | 71 | 119 | 473:478 | -5 | 437 |
| 2 | SpVgg SV WeidenWeidenBayernliga Nord | 8 | 278 | 112 | 70 | 96 | 401:348 | 53 | 406 |
| 3 | FC Memmingen 1907MemmingenRegionalliga Bayern | 8 | 278 | 101 | 61 | 116 | 418:451 | -33 | 364 |
| 4 | 1. SC FeuchtFeucht- | 6 | 210 | 97 | 53 | 60 | 393:295 | 98 | 344 |
| 5 | TSV 1946 AindlingAindling- | 7 | 244 | 94 | 55 | 95 | 408:415 | -7 | 337 |
| 6 | SG Quelle Fürth 1860Quelle Fürth- | 6 | 210 | 91 | 53 | 66 | 363:290 | 73 | 326 |
| 7 | FC StarnbergStarnberg- | 7 | 242 | 88 | 52 | 102 | 370:369 | 1 | 316 |
| 8 | 1. FC Nürnberg IINürnberg IIRegionalliga Bayern | 5 | 176 | 88 | 49 | 39 | 357:227 | 130 | 313 |
| 9 | SpVgg Jahn ForchheimJahn Forchhe- | 6 | 204 | 88 | 43 | 73 | 334:291 | 43 | 307 |
| 10 | SpVgg BayreuthBayreuthRegionalliga Bayern | 6 | 206 | 78 | 50 | 78 | 323:351 | -28 | 284 |
| 11 | SpVgg LandshutSpVgg Landsh- | 6 | 204 | 73 | 48 | 83 | 312:323 | -11 | 267 |
| 12 | SpVgg StegaurachStegaurach- | 5 | 174 | 68 | 40 | 66 | 338:312 | 26 | 244 |
| 13 | SC 04 SchwabachSchwabach- | 5 | 176 | 66 | 43 | 67 | 270:265 | 5 | 241 |
| 14 | 1. FC PassauPassau- | 6 | 204 | 61 | 54 | 89 | 248:348 | -100 | 237 |
| 15 | FC Schweinfurt 05Schweinfurt3. Liga | 4 | 136 | 66 | 35 | 35 | 240:141 | 99 | 233 |
| 16 | SV LohhofLohhof- | 5 | 174 | 64 | 38 | 72 | 247:284 | -37 | 230 |
| 17 | VfL FrohnlachFrohnlach- | 5 | 170 | 59 | 43 | 68 | 229:244 | -15 | 220 |
| 18 | TSV 1860 München II1860 IIBayernliga Süd | 3 | 104 | 66 | 20 | 18 | 233:98 | 135 | 218 |
| 19 | FC IsmaningIsmaningBayernliga Süd | 3 | 108 | 47 | 30 | 31 | 185:141 | 44 | 171 |
| 20 | SpVgg Ansbach 09AnsbachRegionalliga Bayern | 3 | 106 | 46 | 27 | 33 | 193:162 | 31 | 165 |
| 21 | FC AugsburgAugsburgBundesliga | 2 | 74 | 49 | 7 | 18 | 167:85 | 82 | 154 |
| 22 | TSV Schwaben AugsburgS. AugsburgRegionalliga Bayern | 4 | 140 | 41 | 29 | 70 | 177:279 | -102 | 152 |
| 23 | SG Post/Süd RegensburgSüd Regensbu- | 3 | 102 | 42 | 25 | 35 | 179:145 | 34 | 151 |
| 24 | Jahn RegensburgRegensburg3. Liga | 3 | 102 | 41 | 24 | 37 | 175:161 | 14 | 147 |
| 25 | Würzburger FVWürzburgBayernliga Nord | 3 | 108 | 37 | 25 | 46 | 174:202 | -28 | 136 |
| 26 | MTV 1881 IngolstadtMTV Ingolsta- | 3 | 108 | 30 | 32 | 46 | 127:172 | -45 | 122 |
| 27 | FC GundelfingenGundelfingenBayernliga Süd | 3 | 102 | 31 | 27 | 44 | 134:167 | -33 | 120 |
| 28 | SpVgg Greuther Fürth IIFürth IIRegionalliga Bayern | 2 | 70 | 31 | 15 | 24 | 143:118 | 25 | 108 |
| 29 | SpVgg Unterhaching IIU'haching II- | 2 | 70 | 29 | 15 | 26 | 104:102 | 2 | 102 |
| 30 | VfB HelmbrechtsHelmbrechts- | 3 | 102 | 23 | 31 | 48 | 109:195 | -86 | 100 |
| 31 | SC WeismainSC Weismain- | 2 | 68 | 27 | 15 | 26 | 99:111 | -12 | 96 |
| 32 | 1. FC Sand1. FC Sand- | 2 | 74 | 22 | 24 | 28 | 103:119 | -16 | 90 |
| 33 | FC KemptenKempten- | 2 | 72 | 24 | 16 | 32 | 85:132 | -47 | 88 |
| 34 | Türkgücü MünchenTürkgücüBayernliga Süd | 2 | 67 | 19 | 21 | 27 | 83:108 | -25 | 78 |
| 35 | Wacker BurghausenBurghausenRegionalliga Bayern | 1 | 34 | 22 | 9 | 3 | 62:25 | 37 | 75 |
| 36 | ASV 1860 NeumarktNeumarktBayernliga Nord | 2 | 74 | 18 | 20 | 36 | 83:125 | -42 | 74 |
| 37 | FC Falke Markt SchwabenMarkt Schwab- | 2 | 70 | 18 | 16 | 36 | 77:133 | -56 | 70 |
| 38 | TSV 1860 RosenheimTSV Rosenheim- | 2 | 68 | 16 | 16 | 36 | 77:123 | -46 | 64 |
| 39 | SC FürstenfeldbruckFürstenfeldb- | 1 | 34 | 19 | 3 | 12 | 63:43 | 20 | 60 |
| 40 | Jahn Regensburg IIRegensburg IBayernliga Nord | 1 | 34 | 12 | 5 | 17 | 58:63 | -5 | 41 |
| 41 | FC Enikon AugsburgE. Augsburg- | 1 | 34 | 10 | 9 | 15 | 42:50 | -8 | 39 |
| 42 | FC AmbergAmberg- | 1 | 34 | 8 | 15 | 11 | 42:53 | -11 | 39 |
| 43 | Kickers WürzburgK. WürzburgRegionalliga Bayern | 1 | 34 | 11 | 4 | 19 | 58:71 | -13 | 37 |
| 44 | Alemannia HaibachHaibach- | 1 | 34 | 6 | 11 | 17 | 45:73 | -28 | 29 |
| 45 | TSV LandsbergLandsbergBayernliga Süd | 1 | 34 | 6 | 8 | 20 | 39:71 | -32 | 26 |
| 46 | TSV GerbrunnGerbrunn- | 1 | 34 | 4 | 6 | 24 | 32:86 | -54 | 18 |