| 1 | SpVgg Bayern HofHofBayernliga Nord | 10 | 346 | 127 | 84 | 135 | 509:549 | -40 | 465 |
| 2 | SpVgg SV WeidenWeidenBayernliga Nord | 9 | 312 | 122 | 82 | 108 | 442:394 | 48 | 448 |
| 3 | FC Memmingen 1907MemmingenRegionalliga Bayern | 9 | 312 | 112 | 73 | 127 | 463:491 | -28 | 409 |
| 4 | TSV 1946 AindlingAindling- | 8 | 278 | 106 | 65 | 107 | 451:464 | -13 | 383 |
| 5 | 1. FC Nürnberg IINürnberg IIRegionalliga Bayern | 6 | 210 | 109 | 53 | 48 | 425:266 | 159 | 380 |
| 6 | 1. SC FeuchtFeucht- | 6 | 210 | 97 | 53 | 60 | 393:295 | 98 | 344 |
| 7 | SpVgg BayreuthBayreuthRegionalliga Bayern | 7 | 240 | 92 | 60 | 88 | 379:392 | -13 | 336 |
| 8 | SG Quelle Fürth 1860Quelle Fürth- | 6 | 210 | 91 | 53 | 66 | 363:290 | 73 | 326 |
| 9 | FC StarnbergStarnberg- | 7 | 242 | 88 | 52 | 102 | 370:369 | 1 | 316 |
| 10 | SpVgg Jahn ForchheimJahn Forchhe- | 6 | 204 | 88 | 43 | 73 | 334:291 | 43 | 307 |
| 11 | SC 04 SchwabachSchwabach- | 6 | 210 | 78 | 54 | 78 | 318:308 | 10 | 288 |
| 12 | TSV 1860 München II1860 IIBayernliga Süd | 4 | 138 | 87 | 25 | 26 | 304:138 | 166 | 286 |
| 13 | SpVgg LandshutSpVgg Landsh- | 7 | 238 | 77 | 54 | 107 | 348:409 | -61 | 285 |
| 14 | 1. FC PassauPassau- | 7 | 238 | 68 | 65 | 105 | 286:416 | -130 | 269 |
| 15 | SpVgg StegaurachStegaurach- | 5 | 174 | 68 | 40 | 66 | 338:312 | 26 | 244 |
| 16 | FC Schweinfurt 05Schweinfurt3. Liga | 4 | 136 | 66 | 35 | 35 | 240:141 | 99 | 233 |
| 17 | FC IsmaningIsmaningBayernliga Süd | 4 | 142 | 64 | 38 | 40 | 248:188 | 60 | 230 |
| 18 | SV LohhofLohhof- | 5 | 174 | 64 | 38 | 72 | 247:284 | -37 | 230 |
| 19 | VfL FrohnlachFrohnlach- | 5 | 170 | 59 | 43 | 68 | 229:244 | -15 | 220 |
| 20 | SpVgg Ansbach 09AnsbachRegionalliga Bayern | 4 | 140 | 56 | 37 | 47 | 235:207 | 28 | 205 |
| 21 | Würzburger FVWürzburgBayernliga Nord | 4 | 142 | 42 | 38 | 62 | 211:271 | -60 | 164 |
| 22 | SpVgg Greuther Fürth IIFürth IIRegionalliga Bayern | 3 | 104 | 47 | 22 | 35 | 212:164 | 48 | 163 |
| 23 | SpVgg Unterhaching IIU'haching II- | 3 | 104 | 45 | 22 | 37 | 159:134 | 25 | 157 |
| 24 | FC AugsburgAugsburgBundesliga | 2 | 74 | 49 | 7 | 18 | 167:85 | 82 | 154 |
| 25 | TSV Schwaben AugsburgS. AugsburgRegionalliga Bayern | 4 | 140 | 41 | 29 | 70 | 177:279 | -102 | 152 |
| 26 | SG Post/Süd RegensburgSüd Regensbu- | 3 | 102 | 42 | 25 | 35 | 179:145 | 34 | 151 |
| 27 | Jahn RegensburgRegensburg3. Liga | 3 | 102 | 41 | 24 | 37 | 175:161 | 14 | 147 |
| 28 | MTV 1881 IngolstadtMTV Ingolsta- | 3 | 108 | 30 | 32 | 46 | 127:172 | -45 | 122 |
| 29 | FC GundelfingenGundelfingenBayernliga Süd | 3 | 102 | 31 | 27 | 44 | 134:167 | -33 | 120 |
| 30 | SC FürstenfeldbruckFürstenfeldb- | 2 | 68 | 34 | 12 | 22 | 112:90 | 22 | 114 |
| 31 | VfB HelmbrechtsHelmbrechts- | 3 | 102 | 23 | 31 | 48 | 109:195 | -86 | 100 |
| 32 | SC WeismainSC Weismain- | 2 | 68 | 27 | 15 | 26 | 99:111 | -12 | 96 |
| 33 | Jahn Regensburg IIRegensburg IBayernliga Nord | 2 | 68 | 24 | 21 | 23 | 115:103 | 12 | 93 |
| 34 | 1. FC Sand1. FC Sand- | 2 | 74 | 22 | 24 | 28 | 103:119 | -16 | 90 |
| 35 | FC KemptenKempten- | 2 | 72 | 24 | 16 | 32 | 85:132 | -47 | 88 |
| 36 | Türkgücü MünchenTürkgücüBayernliga Süd | 2 | 67 | 19 | 21 | 27 | 83:108 | -25 | 78 |
| 37 | Wacker BurghausenBurghausenRegionalliga Bayern | 1 | 34 | 22 | 9 | 3 | 62:25 | 37 | 75 |
| 38 | ASV 1860 NeumarktNeumarktBayernliga Nord | 2 | 74 | 18 | 20 | 36 | 83:125 | -42 | 74 |
| 39 | FC Falke Markt SchwabenMarkt Schwab- | 2 | 70 | 18 | 16 | 36 | 77:133 | -56 | 70 |
| 40 | TSV 1860 RosenheimTSV Rosenheim- | 2 | 68 | 16 | 16 | 36 | 77:123 | -46 | 64 |
| 41 | TSV GroßbardorfGroßbardorf- | 1 | 34 | 12 | 8 | 14 | 67:72 | -5 | 44 |
| 42 | FC Enikon AugsburgE. Augsburg- | 1 | 34 | 10 | 9 | 15 | 42:50 | -8 | 39 |
| 43 | FC AmbergAmberg- | 1 | 34 | 8 | 15 | 11 | 42:53 | -11 | 39 |
| 44 | Kickers WürzburgK. WürzburgRegionalliga Bayern | 1 | 34 | 11 | 4 | 19 | 58:71 | -13 | 37 |
| 45 | Alemannia HaibachHaibach- | 1 | 34 | 6 | 11 | 17 | 45:73 | -28 | 29 |
| 46 | TSV LandsbergLandsbergBayernliga Süd | 1 | 34 | 6 | 8 | 20 | 39:71 | -32 | 26 |
| 47 | TSV GerbrunnGerbrunn- | 1 | 34 | 4 | 6 | 24 | 32:86 | -54 | 18 |