| 1 | Zenit St. PetersburgSt. PetersburgPremier Liga | 21 | 642 | 352 | 176 | 114 | 1156:598 | 558 | 1232 |
| 2 | ZSKA MoskauZSKA MoskauPremier Liga | 21 | 641 | 355 | 150 | 136 | 1071:563 | 508 | 1215 |
| 3 | Lokomotive MoskauLok. MoskauPremier Liga | 21 | 649 | 320 | 183 | 146 | 931:598 | 333 | 1143 |
| 4 | Spartak MoskauSpartak MoskauPremier Liga | 21 | 643 | 324 | 148 | 171 | 1040:751 | 289 | 1120 |
| 5 | Dynamo MoskauDyn. MoskauPremier Liga | 20 | 616 | 233 | 174 | 209 | 789:734 | 55 | 873 |
| 6 | Rubin KazanRubin KazanPremier Liga | 18 | 567 | 234 | 169 | 164 | 718:556 | 162 | 871 |
| 7 | FK RostowFK RostowPremier Liga | 18 | 558 | 174 | 156 | 228 | 586:693 | -107 | 678 |
| 8 | Krylia Sowjetow SamaraSamaraPremier Liga | 18 | 501 | 154 | 132 | 215 | 534:657 | -123 | 594 |
| 9 | FK Terek GrosnyTerek GrosnyPremier Liga | 14 | 438 | 140 | 114 | 184 | 444:558 | -114 | 534 |
| 10 | FK KrasnodarKrasnodarPremier Liga | 10 | 317 | 148 | 84 | 85 | 505:342 | 163 | 528 |
| 11 | Amkar PermAmkar Perm- | 14 | 438 | 124 | 140 | 174 | 391:513 | -122 | 512 |
| 12 | Saturn RamenskoyeSaturn Ramensk- | 11 | 334 | 114 | 115 | 105 | 373:341 | 32 | 457 |
| 13 | Anzhi MakhachkalaMakhachkalaPremier Liga | 11 | 340 | 98 | 95 | 147 | 348:449 | -101 | 389 |
| 14 | Torpedo MoskauTorp. MoskauPremier Liga | 8 | 233 | 91 | 68 | 74 | 316:291 | 25 | 341 |
| 15 | Tom TomskTomsk- | 10 | 289 | 78 | 77 | 134 | 261:397 | -136 | 311 |
| 16 | FK MoskauFK Moskau- | 9 | 208 | 78 | 68 | 62 | 250:230 | 20 | 302 |
| 17 | Kuban KrasnodarKuban- | 8 | 255 | 71 | 88 | 96 | 280:326 | -46 | 301 |
| 18 | Ural JekaterinburgJekaterinburg- | 8 | 245 | 73 | 69 | 103 | 255:348 | -93 | 288 |
| 19 | FK UfaFK Ufa- | 7 | 216 | 56 | 70 | 90 | 185:248 | -63 | 238 |
| 20 | Spartak NalchikNalchik- | 6 | 194 | 54 | 57 | 83 | 207:239 | -32 | 219 |
| 21 | Arsenal TulaTula- | 6 | 182 | 55 | 38 | 89 | 180:254 | -74 | 203 |
| 22 | Schinnik JaroslawlSchinnik Jar- | 6 | 174 | 49 | 53 | 72 | 175:227 | -52 | 200 |
| 23 | Alania VladikavkazVladikavkaz- | 8 | 205 | 49 | 51 | 105 | 200:317 | -117 | 198 |
| 24 | Rotor WolgogradWolgograd- | 6 | 171 | 44 | 42 | 85 | 172:266 | -94 | 174 |
| 25 | FK KhimkiKhimki- | 4 | 123 | 31 | 31 | 61 | 124:191 | -67 | 124 |
| 26 | Wolga Nischni NowgorodWolga Nischn- | 4 | 134 | 28 | 25 | 81 | 103:218 | -115 | 109 |
| 27 | Sanfrecce HiroshimaHiroshima- | 2 | 69 | 31 | 13 | 25 | 78:76 | 2 | 106 |
| 28 | FC Gazovik OrenburgOrenburgPremier Liga | 3 | 88 | 25 | 22 | 41 | 91:121 | -30 | 97 |
| 29 | Luch-Energia VladivostokVladivostok- | 3 | 90 | 23 | 25 | 42 | 87:131 | -44 | 94 |
| 30 | PFC SochiPFC SochiPremier Liga | 2 | 62 | 25 | 17 | 20 | 93:74 | 19 | 92 |
| 31 | Chernomorets NovorossiskNovorossisk- | 3 | 85 | 23 | 21 | 41 | 94:129 | -35 | 90 |
| 32 | Mordowia SaranskSaransk- | 3 | 90 | 20 | 22 | 48 | 82:150 | -68 | 82 |
| 33 | Uralan ElistaElista- | 3 | 83 | 13 | 22 | 48 | 66:144 | -78 | 61 |
| 34 | FC TambovFC Tambov- | 2 | 66 | 13 | 9 | 44 | 61:120 | -59 | 48 |
| 35 | FK Fakel WoroneschFK Woronesch- | 2 | 30 | 6 | 12 | 12 | 25:45 | -20 | 30 |
| 36 | FK TosnoFK Tosno- | 1 | 30 | 6 | 6 | 18 | 23:54 | -31 | 24 |
| 37 | FC Rotor WolgogradFC Rotor Wolgo- | 1 | 29 | 5 | 7 | 17 | 15:49 | -34 | 22 |
| 38 | Sibir NowosibirskNowosibirsk- | 1 | 30 | 4 | 8 | 18 | 34:58 | -24 | 20 |
| 39 | FK Yenisey KrasnoyarskKrasnoyarsk- | 1 | 30 | 4 | 8 | 18 | 24:55 | -31 | 20 |
| 40 | SKA-KhabarovskSKA-Khabarov- | 1 | 30 | 2 | 7 | 21 | 16:55 | -39 | 13 |
| 41 | Rostselmasch RostowR. Rostow- | 2 | 6 | 1 | 1 | 4 | 6:10 | -4 | 4 |
| 42 | FC Nizhny NovgorodFC Nizhny NovgPremier Liga | 1 | 2 | 1 | 0 | 1 | 2:3 | -1 | 3 |
| 43 | PFK Sokol SaratowSokol Saratow- | 2 | 0 | 0 | 0 | 0 | -:- | -:- | - |